[Neurodebian-users] fsl-5.0-complete package broken

[Alessandro Bellini]

Hello,
I'm trying to install FSL on my computer (Linux Mint Debian Edition, LMDE).
I've installed the repo correctly (Debian testing (jessie)), sinche I found
all the package that I need to install. When I try to install
fsl-5.0-complete I receive an erro message (package broken, could not be
installed)
What's the problem?
Thanks a lot
All the best
Alessandro
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[Yaroslav Halchenko]

Post by Alessandro Bellini
Hello,
I'm trying to install FSL on my computer (Linux Mint Debian Edition,
LMDE). I've installed the repo correctly (Debian testing (jessie)), sinche
I found all the package that I need to install. When I try to install
fsl-5.0-complete I receive an erro message (package broken, could not be
installed)
What's the problem?

could you provide more information?

apt-cache policy fsl fsl-complete fsl-4.1

and then cut/paste entirety of that "package broken" message?

[Alessandro Bellini]

Here you are:

analisi-linux1 analisi # apt-cache policy fsl fsl-complete fsl-4.1
fsl:
Installed: (none)
Candidate: 5.0.7-4~nd80+1
Table version:
5.0.7-4~nd80+1 0
500 http://neurodebian.g-node.org/ jessie/non-free amd64 Packages
4.1.9-7 0
500 http://debian.linuxmint.com/latest/ testing/non-free amd64
Packages
fsl-complete:
Installed: (none)
Candidate: 5.0.7-1~nd80+1
Table version:
5.0.7-1~nd80+1 0
500 http://neurodebian.g-node.org/ jessie/contrib amd64 Packages
fsl-4.1:
Installed: (none)
Candidate: 4.1.9-7+b1
Table version:
4.1.9-7+b1 0
500 http://debian.linuxmint.com/latest/ testing/non-free amd64
Packages

analisi-linux1 analisi # apt-get install fsl-5.0-complete
Reading package lists ... Done
Building dependency tree
Reading state information ... Done
Some packages could not be installed. This can mean
that you have requested an impossible situation or if you are
using the unstable distribution that some required packages
have not yet been created or been moved out of Incoming.
The following information may help to resolve the situation:

The following packages have unmet dependencies:
fsl-5.0-complete: Depends: fsl-5.0-core (> = 5.0.7-1 ~ ~ nd80 + 1) but is
not going to be installed
E: Unable to correct problems, you have held broken packages.

Thanks a lot
Alessandro

Post by Alessandro Bellini

Post by Alessandro Bellini
Hello,
I'm trying to install FSL on my computer (Linux Mint Debian Edition,
LMDE). I've installed the repo correctly (Debian testing (jessie)),

sinche

Post by Alessandro Bellini
I found all the package that I need to install. When I try to install
fsl-5.0-complete I receive an erro message (package broken, could not

be

Post by Alessandro Bellini
installed)
What's the problem?

could you provide more information?
apt-cache policy fsl fsl-complete fsl-4.1
and then cut/paste entirety of that "package broken" message?
--
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist, Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: [phone] Fax: [phone]
WWW: http://www.linkedin.com/in/yarik
_______________________________________________
Neurodebian-users mailing list
Neurodebian-users at lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users

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[Yaroslav Halchenko]

Post by Alessandro Bellini
analisi-linux1 analisi # apt-cache policy fsl fsl-complete fsl-4.1
? Installed: (none)
? Candidate: ?5.0.7-4~nd80+1

nd80 is for upcoming Debian jessie 8.0.

Post by Alessandro Bellini
? ? ?5.0.7-4~nd80+1 0
? ? ? ? 500 [1]http://neurodebian.g-node.org/ jessie/non-free amd64
Packages
? ? ?4.1.9-7 0
? ? ? ? 500 [2]http://debian.linuxmint.com/latest/ testing/non-free amd64

this one is based on wheezy (7.0). So -- you now know what to do ;)

[Alessandro Bellini]

So the newest version 5 of fsl is not available for my mint distribution?
Thaks

Post by Yaroslav Halchenko

Post by Alessandro Bellini
analisi-linux1 analisi # apt-cache policy fsl fsl-complete fsl-4.1
Installed: (none)
Candidate: 5.0.7-4~nd80+1

nd80 is for upcoming Debian jessie 8.0.

Post by Alessandro Bellini
5.0.7-4~nd80+1 0
500 [1]http://neurodebian.g-node.org/ jessie/non-free amd64
Packages
4.1.9-7 0
500 [2]http://debian.linuxmint.com/latest/ testing/non-free

amd64
this one is based on wheezy (7.0). So -- you now know what to do ;)
--
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist, Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: [phone] Fax: [phone]
WWW: http://www.linkedin.com/in/yarik
_______________________________________________
Neurodebian-users mailing list
Neurodebian-users at lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users

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[Yaroslav Halchenko]

Post by Alessandro Bellini
So the newest version 5 of fsl is not available for my mint distribution?

it is available... you should have just used 'wheezy' not 'jessie' in
your /etc/apt/sources.list.d/neurodebian.sources.list (and then apt-get
update)

[Alessandro Bellini]

Hello,
I'm trying some tutorial and I have some problems with FIRST. following the
instruction I type

analisi at analisi-linux1 ~/FSL/fsl_course_data1/seg_struc/first $
fsl5.0-run_first_all -i con0047_brain -b -s L_Hipp,L_Amyg \ -o con0047 -a
con0047_brain_to_std_sub.mat
15399
[1]+ Completato fslview

and the I check the error log

analisi at analisi-linux1 ~/FSL/fsl_course_data1/seg_struc/first $ cat
con0047.logs/*.e*
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first_mult_bcorr: error while loading shared
libraries: libnewimage.so: cannot open shared object file: No such file or
directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first_mult_bcorr: error while loading shared
libraries: libnewimage.so: cannot open shared object file: No such file or
directory
analisi at analisi-linux1 ~/FSL/fsl_course_data1/seg_struc/first $

I had many time the same error "while loading shared libraries", but
usually the solution was to put the string fsl5.0- before the command (for
example fsl5.0-Bet instead of Bet). This time it's not working.

Thanks
Alessandro

Post by Alessandro Bellini

Post by Alessandro Bellini
So the newest version 5 of fsl is not available for my mint

distribution?
it is available... you should have just used 'wheezy' not 'jessie' in
your /etc/apt/sources.list.d/neurodebian.sources.list (and then apt-get
update)
--
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist, Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: [phone] Fax: [phone]
WWW: http://www.linkedin.com/in/yarik

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